Species
The Hardwood Genomics Project hosts genomes, transcriptomes, and annotations for forest trees and other angiosperm woody plant species.
Chinese Chestnut
Draft reference genome, physical map, genetic map.
Green Ash
Transcriptome sequencing, SSRs.
Black Walnut
Transcriptome sequencing, SSRs, BAC, QTL Map, Reference Populations, BAC Sequencing
Species and resources currently available:
- Chinese Chestnut (draft reference genome, physical map, genetic map)
- American Beech (transcriptome sequencing)
- American Chestnut (transcriptome sequencing)
- Black Cherry (low coverage genome sequence, SSRs)
- Black Walnut (transcriptome sequencing, SSRs, BAC, QTL Map, Reference Populations, BAC Sequencing)
- Blackgum (transcriptome sequencing, SSRs)
- Dogwood (transcriptome sequencing)
- Hydrangea (transcriptome sequencing)
- European Chestnut (transcriptome sequencing)
- Green Ash (transcriptome sequencing, SSRs)
- Honeylocust (transcriptome sequencing, SSRs, Framework Map, Reference Populations)
- Japanse Chestnut (transcriptome sequencing)
- Northern Red Oak (transcriptome sequencing, BAC, QTL Map, Reference Populations, BAC Sequencing)
- Redbay (SSRs)
- Red Alder (transcriptome sequencing)
- Sugar Maple (transcriptome sequencing, SSRs)
- American Sweetgum (transcriptome sequencing, SSRs, Framework Map, Reference Populations)
- Tulip Poplar (Framework Map, Reference Populations)
- White Alder (transcriptome sequencing)
- White Ash (SSRs)
- White Oak (transcriptome sequencing, SSRs)
Available Tools
Hardwood Genomics offers a variety of bioinformatics tools to browse, search, visualize, and analyze genomic data.
Cross Site Search
Search multiple genomic databases including Hardwood Genomics, Tree Genes and Citrus Genome
Gene Search
Filter and download transcripts or genes by organism, description or sequence name
Expression Visualization
Use our interactive heat map to visualize gene expression from RNASeq experiments
JBrowse
View genomic sequences and tracks of annotated genes, variants and alignments of transcripts from other related species
Blast
The Basic Local Alignment Search Tool (blast) allows you to search your own sequences for sequence similarity with nucleotide or protein sequences in our database
Tripal Galaxy Workflows
Running common Next Generation Sequence Analysis workflows
