Summary
Resource Type
Analysis
Name
Simple Sequence Repeats (SSR) prediction (A. rubra)
Program, Pipeline, Workflow or Method Name
SSR prediction pipeline
Program Version
n/a
Algorithm
Organism
Data Source
Source Name
: A. rubra assembly
Date Performed
Thursday, July 5, 2018 - 08:51

SSRs were developed from the white alder transcriptome sequences. Bioinformatic processing included trimming, assembly, SSR identification and primer design, processing details including scripts are available.

Protocols followed the same methods published here:

Publication: Lane T, Best T, Zembower N, Davitt J, Henry N, Xu Y, Koch J, Liang H, McGraw J, Schuster S, Shim D, Coggeshall MV, Carlson JE, Staton ME The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. BMC genomics. 2016 Dec;17(1):702.

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Properties
Analysis Type
tripal_ssr
Biological Samples
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