Summary
Name
Black Walnut - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Experiments include ozone exposure, mechanical damage as well as a number of different adult tissue types. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 78834 features across 31 biosamples.

Expression Data
Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Tuesday, July 8, 2014 - 21:00
Data Source
Source Name
: Juglans nigra 120313
Source Version
: 120313
Gene Annotations
Biosamples
NameTissueTreatmentDescription
BW-CH10-14Dleafozone exposure 80ppb for 14 daysThis biomaterial: BW-CH10-14D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH10-28Dleafozone exposure 80ppb for 28 daysThis biomaterial: BW-CH10-28D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH10-7hrleafozone exposure 80ppb for 7 hoursThis biomaterial: BW-CH10-7hr, was created for the analysis: Juglans nigra Gene Atlas
BW-CH11-14Dleafozone exposure 125ppb for 14 daysThis biomaterial: BW-CH11-14D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH11-28Dleafozone exposure 125ppb for 28 daysThis biomaterial: BW-CH11-28D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH11-7hrleafozone exposure 125ppb for 7 hoursThis biomaterial: BW-CH11-7hr, was created for the analysis: Juglans nigra Gene Atlas
BW-CH12-14Dleafozone exposure 225ppb for 14 daysThis biomaterial: BW-CH12-14D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH12-28Dleafozone exposure 225ppb for 28 daysThis biomaterial: BW-CH12-28D, was created for the analysis: Juglans nigra Gene Atlas
BW-CH12-7hrleafozone exposure 225ppb for 7 hoursThis biomaterial: BW-CH12-7hr, was created for the analysis: Juglans nigra Gene Atlas
BW-CH9-14Dleafcontrol chamber ozone 10ppb day14This biomaterial: BW-CH9-14D, was created for the analysis: Juglans nigra Gene Atlas

Pages

Give Feedback!