Summary
Name
Sugar Maple - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure, mechanical damage (wounding), heat, drought, and cold. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 117861 features across 51 biosamples.

Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Sunday, April 17, 2016 - 21:00
Data Source
Source Name
: Acer saccharum 022416
Source Version
: 022416
Gene Annotations
Biosamples
NameTissueTreatmentDescription
SM1variousvarious abiotic stressorsSugar Maple - pooled seedling leaf RNAs from various stress treatments
SM125leafozone (125ppb)Sugar Maple - pooled seedling leaf RNAs, 125 ppb ozone
SM-125-14leafozone (125ppb) 14 daysseedlings exposed to ozone (125ppb) for 14 days (6 pooled)
SM-125-28leafozone (125ppb) 28 daysseedlings exposed to ozone (125ppb) for 28 days (6 pooled)
SM-125-7leafozone (125ppb) 7 hoursseedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
SM225leafozone (225ppb)Sugar Maple - pooled seedling leaf RNAs, 225 ppb ozone
SM-225-14leafozone (225ppb) 14 daysseedlings exposed to ozone (225ppb) for 14 days (6 pooled)
SM-225-28leafozone (225ppb) 28 daysseedlings exposed to ozone (225ppb) for 28 days (6 pooled)
SM-225-7leafozone (225ppb) 7 hoursseedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
SM80leafozone (80ppb)Sugar Maple - pooled seedling leaf RNAs, 80 ppb ozone

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