Summary
Name
Honey Locust - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure, mechanical damage (wounding), heat, drought, and cold. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 56845 features across 9 biosamples.

Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Tuesday, April 5, 2016 - 21:00
Data Source
Source Name
: Gleditsia triacanthos 082614
Source Version
: 082614
Biosamples
NameTissueTreatmentDescription
HL-CL-0rootcold(4C)-immediatelyhoneylocust seedlings - root sample - cold 4C immediate
HL-DRrootdrought(<1.0 mpa)honeylocust seedlings - root sample - drought (<1.0mpa)
HR-R-Contrrootnonehoneylocust seedlings - root sample - control
HCL0rootsnoneHoneylocust -pooled seedling RNAs, control
HL225roots225ppb ozone, varying exposure timesHoneylocust -pooled seedling RNAs, 225 ppb ozone
HL-CR-24rootcold(4C)-24hrhoneylocust seedlings - root sample - cold 4C 24hrs
HL-HRrootheat(40C)-24hrhoneylocust seedlings - root sample - heat 40C 24hrs
HL80roots80ppb ozone, varying exposure timesHoneylocust -pooled seedling RNAs, 80 ppb ozone
HL125roots125ppb ozone, varying exposure timesHoneylocust -pooled seedling RNAs, 125 ppb ozone
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