Summary
Name
Northern Red Oak - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure and mechanical damage (wounding). A number of different adult tissue types were also profiled. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 52662 features across 70 biosamples.

Expression Data
Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Wednesday, February 17, 2016 - 20:00
Data Source
Source Name
: Quercus rubra 120313
Source Version
: 120313
Biosamples
NameTissueTreatmentDescription
RO2-CO7leafRep 2 - ozone (10ppb) 7 hoursRep 2 - seedlings exposed to ozone (10ppb) for 7 hours (6 pooled)
RO13-125-7leafRep 13 - ozone (125ppb) 7 hoursRep 13 - seedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
RO9-CO-7leafRep 9 - ozone (10ppb) 7 hoursRep 9 - seedlings exposed to ozone (10ppb) for 7 hours (6 pooled)
RO9-CO-28leafRep 9 - ozone (10ppb) 28 daysRep 9 - seedlings exposed to ozone (10ppb) for 28 days (6 pooled)
RO9-CO-14leafRep 9 - ozone (10ppb) 14 daysRep 9 - seedlings exposed to ozone (10ppb) for 14 days (6 pooled)
RO8-225-7leafRep 8 - ozone (225ppb) 7 hoursRep 8 - seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
RO8-225-14leafRep 8 - ozone (225ppb) 14 daysRep 8 - seedlings exposed to ozone (225ppb) for 14 days (6 pooled)
RO7-225-7leafRep 7 - ozone (225ppb) 7 hoursRep 7 - seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
RO7-225-28leafRep 7 - ozone (225ppb) 28 daysRep 7 - seedlings exposed to ozone (225ppb) for 28 days (6 pooled)
RO7-225-14leafRep 7 - ozone (225ppb) 14 daysRep 7 - seedlings exposed to ozone (225ppb) for 14 days (6 pooled)

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