Summary
Name
Northern Red Oak - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Wednesday, February 17, 2016 - 20:00
Data Source
Source Name
: Quercus rubra 120313
Source Version
: 120313
Description and Download
Description: 

This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure and mechanical damage (wounding). A number of different adult tissue types were also profiled.

Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.

Expression Data Files

Northern Red Oak Raw Reads Counts

Biosamples
NameTissueTreatmentDescription
RO2-CO7leafRep 2 - ozone (10ppb) 7 hoursRep 2 - seedlings exposed to ozone (10ppb) for 7 hours (6 pooled)
RO13-125-7leafRep 13 - ozone (125ppb) 7 hoursRep 13 - seedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
RO9-CO-7leafRep 9 - ozone (10ppb) 7 hoursRep 9 - seedlings exposed to ozone (10ppb) for 7 hours (6 pooled)
RO9-CO-28leafRep 9 - ozone (10ppb) 28 daysRep 9 - seedlings exposed to ozone (10ppb) for 28 days (6 pooled)
RO9-CO-14leafRep 9 - ozone (10ppb) 14 daysRep 9 - seedlings exposed to ozone (10ppb) for 14 days (6 pooled)
RO8-225-7leafRep 8 - ozone (225ppb) 7 hoursRep 8 - seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
RO8-225-14leafRep 8 - ozone (225ppb) 14 daysRep 8 - seedlings exposed to ozone (225ppb) for 14 days (6 pooled)
RO7-225-7leafRep 7 - ozone (225ppb) 7 hoursRep 7 - seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
RO7-225-28leafRep 7 - ozone (225ppb) 28 daysRep 7 - seedlings exposed to ozone (225ppb) for 28 days (6 pooled)
RO7-225-14leafRep 7 - ozone (225ppb) 14 daysRep 7 - seedlings exposed to ozone (225ppb) for 14 days (6 pooled)

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