Summary
Name
Tulip Poplar - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Friday, March 4, 2016 - 20:00
Data Source
Source Name
: Liriodendron tulipifera 101314
Source Version
: 101314
Description and Download
Description: 

This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Ozone stress experiments were conducted.

Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.

Biosamples
NameTissueTreatmentDescription
TP-14DAy-125ppbleafozone exposure 125ppb for 14 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-225ppbleafozone exposure 225ppb for 14 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-80ppbleafozone exposure 80ppb for 14 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-Coleafcontrol chamber ozone 10ppb day14Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-125leafozone exposure 125ppb for 28 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-225leafozone exposure 225ppb for 28 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-80leafozone exposure 80ppb for 28 daysTulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-COleafcontrol chamber ozone 10ppb day28Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-29Day-125leafozone exposure 125ppb for 29 day + mecanical wounding on day 28Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-29Day-225leafozone exposure 225ppb for 29 day + mecanical wounding on day 28Tulip poplar-two yr old seedlings-open polinated-6pooled

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