Summary
Name
American Sweetgum - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure, mechanical damage (wounding), heat, drought, and cold. A number of different adult tissue types were also profiled. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 127406 features across 44 biosamples.

Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Wednesday, April 20, 2016 - 21:00
Data Source
Source Name
: Liquidambar styraciflua 010515
Source Version
: 010515
Gene Annotations
Biosamples
NameTissueTreatmentDescription
SG1variousvarious abiotic stressorsSweetgum - pooled seedling leaf RNAs from various stress treatments
SG-125-14leafozone (125ppb) 14 daysseedlings exposed to ozone (125ppb) for 14 days (6 pooled)
SG-125-28leafozone (125ppb) 28 daysseedlings exposed to ozone (125ppb) for 28 days (6 pooled)
SG-125-7leafozone (125ppb) 7 hoursseedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
SG-225-14leafozone (225ppb) 14 daysseedlings exposed to ozone (225ppb) for 14 days (6 pooled)
SG-225-28leafozone (225ppb) 28 daysseedlings exposed to ozone (225ppb) for 28 days (6 pooled)
SG-225-7leafozone (225ppb) 7 hoursseedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
SG-80-14leafozone (80ppb) 14 daysseedlings exposed to ozone (80ppb) for 14 days (6 pooled)
SG-80-28leafozone (80ppb) 28 daysseedlings exposed to ozone (80ppb) for 28 days (6 pooled)
SG-80-7leafozone (80ppb) 7 hoursseedlings exposed to ozone (80ppb) for 7 hours (6 pooled)

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