Summary
Name
American Sweetgum - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Wednesday, April 20, 2016 - 21:00
Data Source
Source Name
: Liquidambar styraciflua 010515
Source Version
: 010515
Description and Download
Description: 

This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure, mechanical damage (wounding), heat, drought, and cold. A number of different adult tissue types were also profiled.

Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.

Biosamples
NameTissueTreatmentDescription
SG-80-28leafozone (80ppb) 28 daysseedlings exposed to ozone (80ppb) for 28 days (6 pooled)
SGHEAT4Lleafheat (40C) 4 hoursseedlings exposed to heat (40C) for 4 hours - leaf sample
SG-CO-14leafozone (10ppb) 14 daysseedlings exposed to ozone (10ppb) for 14 days (6 pooled)
SGDRHT7DPpetioledrought (<1.0mpa) 7 daysseedlings exposed to drought for 7 days - petiole sample
SGDRHT7DLleafdrought (<1.0mpa) 7 daysseedlings exposed to drought for 7 days - leaf sample
SGDRHT7DRrootdrought (<1.0mpa) 7 daysseedlings exposed to drought for 7 days - root sample
SGCOLD24Rroot24 hours cold (4C)seedlings exposed 24 hours cold (4C) - root sample
SG-CO-7leafozone (10ppb) 7 hoursseedlings exposed to ozone (10ppb) for 7 hours (6 pooled)
SGHEAT4Rrootheat (40C) 4 hoursseedlings exposed to heat (40C) for 4 hours - root sample
SG-225-28leafozone (225ppb) 28 daysseedlings exposed to ozone (225ppb) for 28 days (6 pooled)

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