Summary
Publication
Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH. Genomic Variation Among and Within Six Juglans Species. G3 (Bethesda). 2018 May 23. pii: g3.200030.2018. doi: 10.1534/g3.118.200030.
Name
Draft reference genomes for six Juglans species and Pterocarya stenoptera
Resource Type
Genome Assembly
Organism
Ontology Browser
View Gene Ontology browser or KEGG Ontology browser for Juglans cathayensis
View Gene Ontology browser or KEGG Ontology browser for Juglans sigillata
View Gene Ontology browser or KEGG Ontology browser for Juglans regia
View Gene Ontology browser or KEGG Ontology browser for Juglans nigra
View Gene Ontology browser or KEGG Ontology browser for Juglans hindsii
View Gene Ontology browser or KEGG Ontology browser for Pterocarya stenoptera
View Gene Ontology browser or KEGG Ontology browser for Juglans microcarpa
Stevens et al. produced ‘draft’ genomes for Juglans regia, five additional Juglans species (J. nigra, J. sigillata, J. microcarpa, J. catheyensis, and J. hindsii) and the related species Pterocarya stenoptera. The J. regia assembly below is not annotated and is not the primary genome Download assembled data:
Juglans sigillata
Juglans sigillata
Juglans microcarpa
Juglans hindsii
Juglans hindsii
Juglans nigra
Juglans nigra
Juglans cathayensis
Pterocarya stenoptera
Pterocarya stenoptera
Stevens et al. performed a reassembly of J. regia with new PacBio reads. This is provided as a supplement to their paper, but as it is not annotated, it is not hosted as the primary J.regia reference genome.
Juglans regia 1.5
Download aligned reads (VCF):
Juglans regia
Juglans nigra
Juglans hindsli
Juglans microcarpa
g3 cover
Details
Program, Pipeline, Workflow or Method Name
Trinity, MUMmer, Samtools
Program Version
n/a
Date Performed
Thursday, June 14, 2018 - 17:00
Data Source
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