Summary
Publication
Hu, M. J., Sun, W. H., Tsai, W. C., Xiang, S., Lai, X. K., Chen, D. Q., ... & Zhang, D. Y. (2020). Chromosome-scale assembly of the Kandelia obovata genome. Horticulture Research, 7(1), 1-12.
Name
Kandelia obovata - Reference Genome
Resource Type
Genome Assembly
Organism
Details
Program, Pipeline, Workflow or Method Name
De novo assembly
Program Version
SMARTdenovo v1.0
Date Performed
Friday, May 8, 2020 - 15:12
Data Source
Description and Download
Fresh K. obovata tissues were collected from the Quanzhou Estuary Wetland Provincial Nature Reserve, Fujian Province, China. Genomic DNA was isolated from fresh leaves for de novo sequencing and assembly. Paired-end libraries (500 bp) were constructed according to the Illumina protocol. Genome size and heterozygosity were measured using KmerFreq and GCE based on a 17-K-mer distribution. In addition, a 20 kb insert library was constructed according to the PacBio RSII protocol and subsequently sequenced on the PacBio platform. The transcriptomes of different tissues of K. obovata were sequenced on the Illumina platform.

Downloads

Genomic scaffolds
All Gene Models CDS
All Gene Models Protein
All Gene Models GFF

Source

Hu, M. J., Sun, W. H., Tsai, W. C., Xiang, S., Lai, X. K., Chen, D. Q., ... & Zhang, D. Y. (2020). Chromosome-scale assembly of the Kandelia obovata genome Horticulture Research, 7(1), 1-12.
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