Summary
Publication
Sork, V. L., Fitz-Gibbon, S. T., Puiu, D., Crepeau, M., Gugger, P. F., Sherman, R., ... & Salzberg, S. L. (2016). First draft assembly and annotation of the genome of a California endemic oak Quercus lobata Née (Fagaceae). G3: Genes, Genomes, Genetics, g3-116. http://www.g3journal.org/content/6/11/3485
Name
Quercus lobata - Reference Genome
Resource Type
Genome Assembly
Organism

Quercus lobata Genome

Version 1.0 and 0.5

Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K,
Langley CH, Pellegrini M, Salzberg SL. First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae). G3: Genes|Genomes|Genetics. 2016 Nov 1;6(11):3485-95.

More information can be found at the
Valley Oak Genome Project.

Go to JBrowse

The Valley Oak genome has two assemblies available. We are hosting genes and
genomic scaffolds from version 1.0, which has not been haplotyped reduced
and up to one third of the genome may be present in two copies. A haplotype
reduced version, 0.5, is also available from the
Valley Oak Genome
Project
and as downloads below. In 0.5, most genomic regions are
represented once but up to 100Mb is missing. More information can be found
in the publication and the Valley Oak Genome Project page.

Downloads

Version 0.5

Valley Oak Genome 0.5 (reduced) sequences

Valley Oak Genome 0.5 (reduced) annotation

SNPs and SMVs

Version 1.0

Valley Oak Genome 1.0 sequences

Valley Oak Genome 1.0 annotation

Details
Program, Pipeline, Workflow or Method Name
Cufflinks
Program Version
cufflinks-2.2.1.Linux_x86_64/gffread
Date Performed
Thursday, April 6, 2017 - 21:00
Data Source
Source Name
: Qlobata_Genome1.0.fasta
Cross Reference
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