Summary
Resource Type
Organism
Abbreviation
C. mollissima
Genus
Castanea
Species
mollissima
Common Name
Chinese Chestnut
Organism Image
Description

Order: Fagales
Family: Fagaceae
Chromosome Number: 2n=24
Genome Size: 800 Mbp
Links:
The American Chestnut Foundation

Transcriptome Assemblies

Archived Version:
Chinese Chestnut Transcriptome Version 081508
Originally from Fagaceae Genomics Web, named CCall Unigene V2
454 and Sanger sequencing assembled in 48,335 transcripts (Aug 2008)

Cross Reference
Reference Genome
NameProgramDate Constructed
Chinese Chestnut Genome Assembly MakerOct 16th, 2014
JBrowse

The Chinese chestnut Jbrowse instance corresponds to the v1.1 reference genome assembly.

Additional tracks:

  • Chinese chestnut variants and read alignments
  • American chestnut variants and read alignments

Go to JBrowse

Analysis Details
Provides detailed information on the programs used to assemble and annotate the data.
NameProgramDate Constructed
Chinese Chestnut (blastp against sprot)blastpOct 16th, 2014
Chinese Chestnut (blastp against TrEMBL)blastpOct 16th, 2014
Chinese Chestnut (blastx against TrEMBL)blastxOct 16th, 2014
Chinese Chestnut (blastx against sprot)blastxOct 16th, 2014
Chinese Chestnut Genome Assembly MakerOct 16th, 2014
Biological Samples
The following browser provides a list of biosamples associated with this organism.
Biosample NameBiosample Provider
LIBEST_024647Greg Miller
LIBEST_024648Greg Miller
LIBEST_024646Greg Miller
LIBEST_024644Unknown
LIBEST_024649Greg Miller
Chinese chestnut cankerUnknown
Chinese chestnut healthy stem 1Unknown
Chinese chestnut healthy stem 2Unknown
Chinese chestnut whole plant 1Unknown
Chinese chestnut whole plant 2Unknown

Pages

Libraries
NameTypeStatus
BAC library CMCMBbbac_librarycurrent
BAC library CMCMBdbac_librarycurrent
CM_MBcgenomic_librarycurrent