Liquidambar styraciflua

Summary

JBrowse

Summary

Resource Type	Organism
Abbreviation	L. styraciflua
Genus	Liquidambar
Species	styraciflua
Common Name	American Sweetgum
Organism Image
Cross Reference	NCBITaxon:4400
Description	Other Common Names: redgum, sapgum, starleaf-gum, bilsted Order: Saxifragales Family: Altingiaceae Chromosome Number: 2n=30, 32 ¹

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Transcriptome

Name	Program	Date Constructed
Liquidambar styraciflua - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Jan 5th, 2015

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Liquidambar styraciflua - peptides InterProScan	InterProScan	Jan 5th, 2015
Liquidambar styraciflua - mRNA BLASTX against TrEMBL	blastx	Apr 22nd, 2016
Liquidambar styraciflua - MRNA BLASTX against SwissProt	blastx	Apr 22nd, 2016
Liquidambar styraciflua - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Jan 5th, 2015
Simple Sequence Repeats (SSR) prediction (L. styraciflua)	SSR prediction pipeline	Jul 5th, 2018
Simple Sequence Repeats (SSR) polymorphism confirmation (L. styraciflua)	SSR polymorphism pipeline L. styraciflua	Aug 16th, 2018
American Sweetgum - Abiotic Stress Gene Expression	HTSeq; RPKM	Apr 21st, 2016

Biological Samples

Name	Tissue	Treatment	Description
SG1	various	various abiotic stressors	Sweetgum - pooled seedling leaf RNAs from various stress treatments
SG-125-14	leaf	ozone (125ppb) 14 days	seedlings exposed to ozone (125ppb) for 14 days (6 pooled)
SG-125-28	leaf	ozone (125ppb) 28 days	seedlings exposed to ozone (125ppb) for 28 days (6 pooled)
SG-125-7	leaf	ozone (125ppb) 7 hours	seedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
SG-225-14	leaf	ozone (225ppb) 14 days	seedlings exposed to ozone (225ppb) for 14 days (6 pooled)
SG-225-28	leaf	ozone (225ppb) 28 days	seedlings exposed to ozone (225ppb) for 28 days (6 pooled)
SG-225-7	leaf	ozone (225ppb) 7 hours	seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
SG-80-14	leaf	ozone (80ppb) 14 days	seedlings exposed to ozone (80ppb) for 14 days (6 pooled)
SG-80-28	leaf	ozone (80ppb) 28 days	seedlings exposed to ozone (80ppb) for 28 days (6 pooled)
SG-80-7	leaf	ozone (80ppb) 7 hours	seedlings exposed to ozone (80ppb) for 7 hours (6 pooled)

Pages

Predicted SSRS (genomic)

microsatellite:

There are 2147 SSR markers associated with 2147 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction (L. styraciflua)

You can search for markers below: the form will return the gene features they are associated with.

Gene Ontology Browser

Loading browser. Please wait.

KEGG Browser

Loading browser. Please wait.