Resource Type
P. borbonia
Common Name
Organism Image

Other Common Names: tisswood, scrubbay, shorebay, swampbay.
Order: Laurales
Family: Lauraceae
Wikipedia Entry for laurel wilt disease
USDA ARS Recovery Plan for Laurel Wilt on Redbay and Other Forest Species

Polymorphic SSR Markers:

A subset of the above predicted SSRs have been screened for polymorphism and published in a population diversity study:

Chen CC, Xu Y, Xu T, Staton M, Stott G, Bukles O, Schlarbaum SE, Carlson JE, Liang H. Diversity level of genomic microsatellites in redbay (Persea borbonia L.) generated by Illumina sequencing. Journal of Plant Science and Molecular Breeding. 2015 May 13;4(1):2.

Cross Reference
Predicted SSRS (genomic)

Publication: Staton M, Best T, Khodwekar S, Owusu S, Xu T, Xu Y, Jennings T, Cronn R, Arumuganathan AK, Coggeshall M, Gailing O. Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing. PloS one. 2015 Dec 23;10(12):e0145031.

In order to develop SSR resources for ten important North American hardwood tree species, we individually barcoded and multiplex sequenced DNA from ten hardwood forest tree species using short reads produced from an Illumina HiSeq. Raw reads can be downloaded from the NCBI short read archive, project SRP021923. Bioinformatic processing included trimming, assembly, SSR identification and primer design, processing details including scripts are available.

Statistics (combination of two sequenced libraries):

Untrimmed Pairs 15,856,442
Untrimmed Bases 3,203,001,284
Reconstructed Fragments 12,412,143
Reconstructed Fragments - Bases 1,868,581,401
Dinucleotide repeats with primers 16,010
Trinucleotide repeats with primers 1886
Tetranucleotide repeats with primers 271

Download Files:

*Please contact the site admin if you would like to download the file of extended fragments.