Castanea dentata

Summary

JBrowse

Summary

Resource Type	Organism
Abbreviation	C. dentata
Genus	Castanea
Species	dentata
Common Name	American Chestnut
Organism Image
Cross Reference	NCBITaxon:134033
Description	Order: Fagales Family: Fagaceae Chromosome Number: 2n=24 Genome Size: 800 Mbp Links: The American Chestnut Foundation New York State's American Chestnut Research and Restoration Project

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Transcriptome

Name	Program	Date Constructed
[Archived] Castanea dentata - Transcriptome Assembly AC454_v3	SeqManPro	Aug 15th, 2008

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Castanea dentata - peptides InterProScan	InterProScan	May 15th, 2016
Castanea dentata - mRNA BLASTX against TrEMBL	blastx	May 15th, 2016
Castanea dentata - mRNA BLASTX against SwissProt	blastx	May 15th, 2016
Simple Sequence Repeats (SSR) prediction ( C. dentata)	SSR prediction pipeline	Jul 5th, 2018
[Archived] Castanea dentata - Transcriptome Assembly AC454_v3	SeqManPro	Aug 15th, 2008

Biological Samples

Name	Tissue	Treatment	Description
American chestnut canker	Not set	Not set	ESTS derived from combined tissues of innoculated, mature tree BA69. Combined tissues included stems (secondary phloem and primary periderm) wounded plus inoculated with blight fungus culture.
American chestnut healthy stem 1	Not set	Not set	ESTS derived from combined tissues of healthy, mature tree AC 4T7, Wisneiwski genotype from CAES. Combined tissues includedHealthy stem samples of bark, vascular cambium and wood attached to each other.
American chestnut healthy stem 2	Not set	Not set	ESTS derived from combined tissues of healthy, mature tree AC 1T6, Watertown genotype from CAES. Combined tissues from healthy stem included of bark, vascular cambium and wood attached to each other.
American chestnut whole plant 1	Not set	Not set	ESTS derived from combined tissues of healthy, mature tree AC 4T7, Wisneiwski genotype from CAES. A mixture of tissues representing the whole plant was combined.
American chestnut whole plant 2	Not set	Not set	ESTS derived from combined tissues of healthy, mature tree AC 1T6, Watertown genotype from CAES. A mixture of tissues representing the whole plant was combined.

Predicted SSRS (genomic)

microsatellite:

There are 773 SSR markers associated with 773 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction ( C. dentata)

You can search for markers below: the form will return the gene features they are associated with.

Libraries

Name	Type	Status
American Chestnut BAC library CDC_Ba	nucleic acid library	current

Gene Ontology Browser

Loading browser. Please wait.

KEGG Browser

Loading browser. Please wait.