Analysis Namede novo Northern Red Oak (Quercus rubra) - RO454_v2
Transcriptome NameQuercus rubra 081508
MethodSeqManPro (8.0.2)
Source (081508)
Date performed2008-08-15
Number of Contigs28,041

This transcriptome assembly was originally hosted on the Fagaceae Genomics Web (FGW), which has now been archived. Sequence information is maintained here in downloadable format only.

FGW Name RO454 Unigene V2
Date 2008-08-15
Software SeqManPro
Software Version 8.0.2
Number of Contigs 28,041
Libraries Included in Assembly 2 (ROA, ROB)

Download assembled data:

Contigs (fasta format)
Ace file

Raw data may be downloaded from NCBI SRA, linked below.

Library Description Library Code Platform 454 Reads 454 Bases
Red Oak above ground tissues ROA 454 GS FLX 131,630 32,102,277
Red Oak below ground tissues ROB 454 GS FLX 145,254 34,237,370