Juglans cathayensis

Summary

Reference Genome

JBrowse

Feature Search

Transcriptome

Analysis Details

Biological Samples

Mapping Population

Predicted SSRS (genomic)

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Physical and Genetic Map

Gene Ontology Browser

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Summary

Resource Type	Organism
Abbreviation	J. cathayensis
Genus	Juglans
Species	cathayensis
Common Name	Chinese Walnut
Organism Image
Description	J cathayensis, a native Chinese walnut, is a flower bearing tree where the nuts cluster into large groups called grapes. The wood from the tree is used in furniture making.

Reference Genome

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

JBrowse

Stephens et al. produced ‘draft’ genomes for six Juglans species and the related Pterocarya stenoptera. The draft genome contigs were aligned to the Juglans regia genome scaffolds using nucmer (see paper for details). These alignments are available as tracks on the J. regia JBrowse.

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Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018