Juglans hindsii

Summary

Reference Genome

JBrowse

Feature Search

Transcriptome

Analysis Details

Biological Samples

Mapping Population

Confirmed Polymorphic SSRs

Predicted SSRS (genomic)

Polymorphic SSRS

Libraries

Physical and Genetic Map

Ontology Browser

Summary

Resource Type	Organism
Abbreviation	J. hindsii
Genus	Juglans
Species	hindsii
Common Name	Northern California Black Walnut
Organism Image
Description	J hindsii is native to northern California but has since spread throughout the region via cultivation. It is used as a rootstock for J. regia, an ornamental, and for lumber where it is referred to as claro wood.

Reference Genome

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

JBrowse

Stephens et al. produced ‘draft’ genomes for six Juglans species and the related Pterocarya stenoptera. The draft genome contigs were aligned to the Juglans regia genome scaffolds using nucmer (see paper for details). These alignments are available as tracks on the J. regia JBrowse.

Go to JBrowse

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

Predicted SSRS (genomic)

microsatellite:

There are 0 SSR markers associated with 0 features in this organism.

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