Juglans microcarpa

Summary

Reference Genome

JBrowse

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Transcriptome

Analysis Details

Biological Samples

Mapping Population

Predicted SSRS (genomic)

Libraries

Physical and Genetic Map

Gene Ontology Browser

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Summary

Resource Type	Organism
Abbreviation	J. microcarpa
Genus	Juglans
Species	microcarpa
Common Name	Texas Black Walnut
Organism Image
Cross Reference	There are no cross references.
Description	J. microcarpa thrives in riparian habitats in arid plains of Mexico and Southwestern United States. The tree is used as rootstock for its resistances to biotic and abiotic stresses.

Reference Genome

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

JBrowse

Stephens et al. produced ‘draft’ genomes for six Juglans species and the related Pterocarya stenoptera. The draft genome contigs were aligned to the Juglans regia genome scaffolds using nucmer (see paper for details). These alignments are available as tracks on the J. regia JBrowse.

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Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018