Juglans sigillata

Summary

Reference Genome

JBrowse

Feature Search

Transcriptome

Analysis Details

Biological Samples

Mapping Population

Confirmed Polymorphic SSRs

Predicted SSRS (genomic)

Polymorphic SSRS

Libraries

Physical and Genetic Map

Ontology Browser

Summary

Resource Type	Organism
Abbreviation	J. sigillata
Genus	Juglans
Species	sigillata
Common Name	Iron Walnut
Description	J. sigillata is a medium-sized tree found on mountain slopes in southern China and in Tibet. The structure of its genetic diversity and relationship to sympatric J. regia is thought to reflect human kin groups and distance between villages.

Reference Genome

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

JBrowse

Stephens et al. produced ‘draft’ genomes for six Juglans species and the related Pterocarya stenoptera. The draft genome contigs were aligned to the Juglans regia genome scaffolds using nucmer (see paper for details). These alignments are available as tracks on the J. regia JBrowse.

Go to JBrowse

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Draft reference genomes for six Juglans species and Pterocarya stenoptera	Trinity, MUMmer, Samtools	Jun 14th, 2018

Predicted SSRS (genomic)

microsatellite:

There are 0 SSR markers associated with 0 features in this organism.

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