Liriodendron tulipifera

Summary

Reference Genome

JBrowse

Feature Search

Transcriptome

Analysis Details

Biological Samples

Mapping Population

Predicted SSRS (genomic)

Libraries

Physical and Genetic Map

Gene Ontology Browser

KEGG Browser

Summary

Resource Type	Organism
Abbreviation	L. tulipifera
Genus	Liriodendron
Species	tulipifera
Common Name	Tulip Poplar
Organism Image
Description	Other Common Names: tulip tree, American tulip tree, tuliptree, yellow poplar Order: Magnoliales Family: Magnoliaceae Chromosome Number: 2n=38 ¹ Genome Size: 1,802 Mbp per haploid genome (±16 SD) (Liang et al., 2007)
Cross Reference	NCBITaxon:3415

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Transcriptome

Name	Program	Date Constructed
Liriodendron tulipifera - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Oct 13th, 2014
[Archived] Liriodendron tulipifera - Transcriptome Assembly v120313	Trinity; CD-HIT-EST	Dec 3rd, 2013

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Liriodendron Tulipifera - peptides InterProScan	InterProScan	Apr 25th, 2016
Liriodendron tulipifera- mRNA BLASTX against TrEMBL	blastx	Apr 25th, 2016
Liriodendron tulipifera - mRNA BLASTX against SwissProt	blastx	Apr 25th, 2016
Liriodendron tulipifera - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Oct 13th, 2014
Simple Sequence Repeats (SSR) prediction (L. tulipifera)	SSR prediction pipeline	Jul 5th, 2018
Simple Sequence Repeats (SSR) polymorphism confirmation (L. tulipifera)	SSR polymorphism pipeline L. tulipifera	Aug 16th, 2018
Tulip Poplar - Abiotic Stress Gene Expression	HTSeq; RPKM	Mar 5th, 2016
[Archived] Liriodendron tulipifera - Transcriptome Assembly v120313	Trinity; CD-HIT-EST	Dec 3rd, 2013

Biological Samples

Name	Tissue	Treatment	Description
TP-29Day-125	leaf	ozone exposure 125ppb for 29 day + mecanical wounding on day 28	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-CO	leaf	control chamber ozone 10ppb day28	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-80	leaf	ozone exposure 80ppb for 28 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-225	leaf	ozone exposure 225ppb for 28 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-28Day-125	leaf	ozone exposure 125ppb for 28 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-Co	leaf	control chamber ozone 10ppb day14	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-80ppb	leaf	ozone exposure 80ppb for 14 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-225ppb	leaf	ozone exposure 225ppb for 14 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-14DAy-125ppb	leaf	ozone exposure 125ppb for 14 days	Tulip poplar-two yr old seedlings-open polinated-6pooled
TP-7HR-Co	leaf	control chamber ozone 10ppb	Tulip poplar-two yr old seedlings-open polinated-6pooled

Pages

Mapping Population

Locations: University of Tennessee, East Tennessee State Nursery

Principal Investigators: Scott Schlarbaum (University of Tennessee), Haiying Liang (Clemson University)

Co-PI Schlarbaum generated hundreds of seeds from three years of controlled crosses from parent trees 108A and 23. These seeds were subsequently germinated, grown out and maintained in containers. All seedlings of crosses were screened to confirm paternity, yielding 325 full-sibs that were planted at the East Tennessee State Nursery. The population is being maintained by the UT Tree Improvement Program. Planted seedlings are being protected from rabbits and deer with a 1’ tree shelter around the base of each seedling, encompassed by an 18” diameter, 5’ tall cage of woven wire.

Please contact us for more information or if you are interested in utilizing this population for research. Genotype information will be posted here when publicly available.

Predicted SSRS (genomic)

microsatellite:

There are 489 SSR markers associated with 489 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction (L. tulipifera)

You can search for markers below: the form will return the gene features they are associated with.

Libraries

Name	Type	Status
Tulip Poplar BAC Library (LT__Ba)	nucleic acid library	current

Gene Ontology Browser

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KEGG Browser

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