Malus domestica

Summary

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Summary

Resource Type	Organism
Abbreviation	M. domestica
Genus	Malus
Species	domestica
Common Name	Apple
Organism Image
Cross Reference	NCBI BioProject:PRJNA379390
Description	Order: Rosales Family: Rosaceae Malus domestica is a deciduous Tree growing to 9 m (29ft 6in). Apple trees are able to self-pollinate and flower from April to June producing fruit in the fall. Can grow in hardy zones 3-8 in sunny or shaded habitats in well drained soil. Credits: Plants For A Future Photo Credits: stux The primary repository for apple genetic, genomic and breeding data is the Genome Database for Rosaceae.

Reference Genome

Name	Program	Date Constructed
Malus domestica - Reference Genome	SOAPdenovo	Jun 3rd, 2020

Feature Search

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Gene Expression Profiles

Name	Program	Date Constructed
Malus domestica Gene Atlas	Nextflow Gene Expression (Skewer, STAR, HTSeq)	Jul 20th, 2020

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Malus domestica - peptides InterProScan	interproscan	Jun 3rd, 2020
Malus domestica - mRNA BLASTX against Swissprot	blastx	Jun 3rd, 2020
Malus domestica - mRNA BLASTX against TrEMBL	blastx	Jun 3rd, 2020
Malus domestica - peptides KEGG	KEGG (Ghost Koala)	Jun 11th, 2020
Malus domestica - Reference Genome	SOAPdenovo	Jun 3rd, 2020
Malus domestica Gene Atlas	Nextflow Gene Expression (Skewer, STAR, HTSeq)	Jul 20th, 2020

Biological Samples

Name	Tissue	Treatment	Description
0 hours post inoculated	Leaf	Mock-infected by Alternaria alternata	Plant sample from Malus domestica
0 HPI (SRR4428938)	Leaf	Mock-infected by Alternaria alternata	This biomaterial: 0 HPI (SRR4428938), was created for the analysis: Malus domestica Gene Atlas
0 HPI (SRR4428939)	Leaf	Mock-infected by Alternaria alternata	This biomaterial: 0 HPI (SRR4428939), was created for the analysis: Malus domestica Gene Atlas
0 HPI (SRR4428941)	Leaf	Mock-infected by Alternaria alternata	This biomaterial: 0 HPI (SRR4428941), was created for the analysis: Malus domestica Gene Atlas
12 hours post inoculated	Leaf	infected by Alternaria alternata 12 hours	Plant sample from Malus domestica
18 hours post inoculated	Leaf	infected by Alternaria alternata 18 hours	This biomaterial: 18 hours post inoculated, was created for the analysis: Malus domestica Gene Atlas
36 hours post inoculated	Leaf	infected by Alternaria alternata 36 hours	Plant sample from Malus domestica
72 hours post inoculated	Leaf	infected by Alternaria alternata 72 hours	This biomaterial: 72 hours post inoculated, was created for the analysis: Malus domestica Gene Atlas
A1	Not set	Not set	This biomaterial: A1, was created for the analysis: Malus domestica Gene Atlas
A10	Leaf	A10_Fire Blight Infection	This biomaterial: A10, was created for the analysis: Malus domestica Gene Atlas

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