Nyssa sylvatica

Summary

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Summary

Resource Type	Organism
Abbreviation	N. sylvatica
Genus	Nyssa
Species	sylvatica
Common Name	Blackgum
Organism Image
Cross Reference	NCBITaxon:4292
Description	Other Common Names: black tupelo, tupelo Order: Cornales Family: Cornaceae

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Gene Expression Profiles

Name	Program	Date Constructed
Blackgum - Abiotic Stress Gene Expression	HTSeq; RPKM	Feb 12th, 2016

Transcriptome

Name	Program	Date Constructed
Nyssa sylvatica - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Oct 13th, 2014
[Archived] Nyssa sylvatica - Transcriptome Assembly v120313	Trinity; CD-HIT-EST	Dec 3rd, 2013

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Nyssa sylvatica - peptides InterProScan	InterProScan	Feb 12th, 2016
Nyssa sylvatica - mRNA BLASTX against TrEMBL	blastx	Apr 16th, 2016
Nyssa sylvatica - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Oct 13th, 2014
Simple Sequence Repeats (SSR) prediction (N. sylvatica)	SSR prediction pipeline	Jul 5th, 2018
Nyssa sylvatica - mRNA BLASTX against SwissProt	blastx	Feb 12th, 2016
Blackgum - Abiotic Stress Gene Expression	HTSeq; RPKM	Feb 12th, 2016
[Archived] Nyssa sylvatica - Transcriptome Assembly v120313	Trinity; CD-HIT-EST	Dec 3rd, 2013

Biological Samples

Name	Tissue	Treatment	Description
BG-14DAy-125ppb	leaf	ozone exposure 125ppb for 14 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-225ppb	leaf	ozone exposure 225ppb for 14 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-80ppb	leaf	ozone exposure 80ppb for 14 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-Co	leaf	control chamber ozone 10ppb day14	Black Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-125	leaf	ozone exposure 125ppb for 28 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-225	leaf	ozone exposure 225ppb for 28 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-80	leaf	ozone exposure 80ppb for 28 days	Black Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-CO	leaf	control chamber ozone 10ppb day28	Black Gum -two yr old seedlings-open polinated-6pooled
BG-29Day-125	leaf	ozone exposure 125ppb for 29 day + mecanical wounding on day 28	Black Gum -two yr old seedlings-open polinated-6pooled
BG-29Day-225	leaf	ozone exposure 225ppb for 29 day + mecanical wounding on day 28	Black Gum -two yr old seedlings-open polinated-6pooled

Pages

Predicted SSRS (genomic)

microsatellite:

There are 854 SSR markers associated with 854 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction (N. sylvatica)

You can search for markers below: the form will return the gene features they are associated with.

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