Summary
Resource Type
Organism
Abbreviation
Q. robur
Genus
Quercus
Species
robur
Common Name
Pedunculate Oak
Organism Image
Cross Reference
Description

Other Common Names: English Oak
Order: Fagales
Family: Fagaceae
Chromosome Number: 2n=24
Genome Size: 740 Mbp
Links to other sites housing genomic resources:
BAC Library (available from the CNRGV)
Transcriptome Sequences (available from the Quercus Portal)
Densely Populated Genetic Map (available from the Quercus Portal)
Quercus Portal - a european genetic and genomic web resource for Quercus
Draft Reference Genome:
A French consortium led by Christophe Plomion at INRA Bordeaux has sequenced and assembled the Q. robur genome.
Oak Genome Sequencing Website
Publication:
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B, Fouteau S, Francillonne N, Gaspin C, Guichard C, Klopp C, Labadie K, Lalanne C, Le Clainche I, Leplé JC, Le Provost G, Leroy T, Lesur I, Martin F, Mercier J, Michotey C, Murat F, Salin F, Steinbach D, Faivre-Rampant P, Wincker P, Salse S, Quesneville H, Kremer A (2016) Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Mol Ecol Res. 16: 254-265

Reference Genome
NameProgramDate Constructed
Quercus robur - Reference GenomeBlaster, Censor, RepeatMaskerNov 13th, 2018
Analysis Details
Provides detailed information on the programs used to assemble and annotate the data.
NameProgramDate Constructed
Quercus robur - Reference GenomeBlaster, Censor, RepeatMaskerNov 13th, 2018
Quercus robur - mRNA BLASTX against SwissProtblastxNov 16th, 2018
Quercus robur - mRNA BLASTX against TrEMBLblastxNov 16th, 2018
Quercus robur peptides InterProScaninterproscanNov 16th, 2018
Libraries
NameTypeStatus
Quercus robur HindIII BAC Librarynucleic acid librarycurrent
Quercus robur EcoRI BAC librarynucleic acid librarycurrent
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