| de novo White Oak (Quercus alba) - WO454_v2 | Quercus alba (White Oak) | SeqManPro | 22102 | 08-15-2008 |
| de novo White Alder (Alnus rhombifolia) | Alnus rhombifolia (White Alder) | Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST | 26186 | 02-18-2016 |
| de novo Tulip Poplar (Liriodendron tulipifera) | Liriodendron tulipifera (Tulip Poplar) | Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST | 58249 | 10-13-2014 |
| de novo Sugar Maple (Acer saccharum) | Acer saccharum (Sugar Maple) | Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST | 117861 | 02-24-2016 |
| de novo Red Alder (Alnus rubra) | Alnus rubra (Red Alder) | Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST | 29113 | 02-18-2016 |
| de novo Northern Red Oak (Quercus rubra) | Quercus rubra (Northern Red Oak) | Trinity; CD-HIT-EST | 52662 | 12-03-2013 |
| de novo Hydrangea (Hydrangea macrophylla) | Hydrangea macrophylla (Hydrangea) | Newbler (Roche) | 42682 | 12-07-2016 |
| de novo Honey Locust (Gleditsia triacanthos) | Gleditsia triacanthos (Honeylocust) | Trinity; CD-HIT-EST | 56845 | 08-26-2014 |
| de novo Green ash (Fraxinus pennsylvanica) | Fraxinus pennsylvanica (Green Ash) | Trinity; CD-HIT-EST | 107611 | 12-03-2013 |
| de novo Dogwood (Cornus florida) | Cornus florida (Dogwood) | Newbler (Roche) | 43158 | 12-06-2016 |
| de novo Black Walnut (Juglans nigra) | Juglans nigra (Black Walnut) | Trinity; CD-HIT-EST | 78834 | 12-03-2013 |
| de novo Blackgum (Nyssa sylvatica) | Nyssa sylvatica (Blackgum) | Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST | 138819 | 10-13-2014 |
| de novo Black Cherry (Prunus serotina) Unigene v1.0 (Penn State) | Prunus serotina (Black Cherry) | Newbler | 28461 | 09-30-2012 |
| de novo American sweetgum (Liquidambar styraciflua) | Liquidambar styraciflua (American Sweetgum) | Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST | 127406 | 01-05-2015 |
| de novo American Chestnut (Castanea dentata) - AC454_v3 | Castanea dentata (American Chestnut) | SeqManPro | 45288 | 08-15-2008 |
| de novo American Beech (Fagus grandifolia) - ABall_v2 | Fagus grandifolia (American Beech) | SeqManPro | 8319 | 08-15-2008 |
| [Archived] de novo Tulip Poplar (Liriodendron tulipifera) - 120313 | Liriodendron tulipifera (Tulip Poplar) | Trinity; CD-HIT-EST | 53346 | 12-03-2013 |
| [Archived] de novo Sugar Maple (Acer saccharum) - 010515 | Acer saccharum (Sugar Maple) | Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST | 128406 | 01-05-2015 |
| [Archived] de novo Northern Red Oak (Quercus rubra) - RO454_v2 | Quercus rubra (Northern Red Oak) | SeqManPro | 28041 | 08-15-2008 |
| [Archived] de novo Northern Red Oak Ozone Treatment Experiment | Quercus rubra (Northern Red Oak) | Trinity | 45857 | 10-10-2011 |
| [Archived] de novo Blackgum (Nyssa sylvatica) - 120313 | Nyssa sylvatica (Blackgum) | Trinity; CD-HIT-EST | 55630 | 12-03-2013 |
